1. Introduction
Irreversible thermodynamic processes are characterized by a positive entropy change in their “ Universe”, i. e., in the combined system of interest and its environment [ 1 ]. In macroscopic (equilibrium) thermodynamics, where entropy is a state variable, this change usually refers to the difference between the entropy in the final state of the “ Universe” reached at the end of the process and in the initial state from where it started. In small mesoscopic systems on the micro- and nanometer scale, such as a colloidal Brownian particle diffusing in an aqueous solution, it has been established within the framework of stochastic thermodynamics [ 2 – 6 ] that the total entropy change should be evaluated from the entropy produced in the system and in its thermal environment along the specific trajectory the system follows during the process. This procedure remains valid even when the system is far from equilibrium, for example due to persistent currents or because it is driven by an external protocol realizing the thermodynamic process. The omnipresence of thermal fluctuations on the mesoscopic scale leads to a distribution of possible paths the system can take to go from the initial to the final state, and, accordingly to a distribution of entropy changes. A central result in stochastic thermodynamics is that the total entropy change along a specific realization of the system path (divided by Boltzmann’s constant ) equals the log-ratio of probabilities for observing that specific path vs. observing the same path in a time-reversed manner, i. e., traversing the same trajectory, but from the final state to the original initial state [ 2 – 5 ]. As a direct consequence, the total entropy change fulfills a so-called fluctuation theorem,(the angular brackets denote an average over all trajectories connecting the initial and final states), which can be viewed as a generalization of the second law of thermodynamics to the non-equilibrium realm when deviations from equilibrium are induced by externally applied forces or gradients.
A fundamentally different class of non-equilibrium systems are so-called “ active particles”, like Janus colloids with catalytic surfaces or bacteria [ 7 – 11 ], which have the ability to locally convert energy into self-propulsion, i. e., they move independently of external forces or thermal fluctuations. The source of non-equilibrium is the energy-to-motion conversion process on the level of the individual particle. This out-of-equilibrium process produces entropy, but the various degrees of freedom maintaining the self-propulsion are usually not observable in typical experiments with active particles, such that this entropy production can in general not be quantified. Moreover, for the (collective) behavior of active particles emerging from self-propulsion, as described, e. g., in Refs. 12 – 15 , the details of the propulsion mechanism and the amount of dissipation connected with it are largely irrelevant. In analogy to the stochastic thermodynamics of passive Brownian particles, a central question in active matter is therefore how the path probabilities for translational degrees of freedom of the active particles and the associated log-ratio of forward vs. backward path probabilities is connected to irreversibility and entropy production [ 16 – 18 ]. We remark that this is an ongoing debate [ 16 , 19 – 24 ] which we will not resolve here. Rather, we will provide a central step toward an understanding of the role of the path probability ratio in active matter by providing exact analytical expressions for a simple but highly successful and well-established [ 15 , 25 – 31 ] model of active matter, namely the active Ornstein-Uhlenbeck particle (AOUP) [ 16 , 18 – 21 , 24 , 32 – 44 ]. In this model, self-propulsion is realized via a fluctuating “ driving force” in the equations of motion [ 7 , 10 ] with Gaussian distribution and exponential time-correlation (see Section 2. 1). By integrating out these active fluctuations, we derive an explicit analytical expression for the path weight of an AOUP, valid for arbitrary values of the model parameters, arbitrary finite duration of the particle trajectory and arbitrary initial distributions of particle positions and active fluctuations (see Section 4). Using this path weight, we then derive the irreversibility measure in form of the log-ratio of forward vs. backward path probabilities and comment on its physical implications (Section 5). Before establishing these general results, we briefly recall earlier findings from Ref. 18 for independent initial conditions of particle positions and active fluctuations, see Section 3. We conclude with a short discussion in Section 6, including potential applications of our results.
2. Setup
2. 1. Model
The model for an active Ornstein-Uhlenback particle (AOUP) consists in a standard overdamped Langevin equation for a passive Brownian particle at position in d dimensions with an additional fluctuating force, which represents the active self-propulsion and which we denote by ,
Here, the dot denotes the time-derivative, γ is the viscous friction coefficient, represents externally applied forces (conservative or non-conservative, and possibly time-dependent). Furthermore, are mutually independent Gaussian white noise sources modeling thermally fluctuating forces with δ -correlation in time, i. e.,,, and D is the particle diffusion coefficient, related to the temperature T of the thermal bath via Einstein’s relation . All bold-face letters represent d -dimensional vectors with components usually labeled by subscripts i , j , etc. In analogy to the thermal fluctuations, we denote the strength of the active fluctuations by with an active “ diffusion coefficient”. For an AOUP, the active fluctuations follow a Gaussian process with exponential time-correlations, which can be generated by a so-called Ornstein-Uhlenbeck process,
where is the correlation time of the active noise fluctuations, i. e.,
2. 2. Central Quantity of Interest
Our central goal is to evaluate the path weight for particle positions alone, conditioned on the initial position for an arbitrary initial distribution of the active fluctuations given the specific value . By definition, we can write this path weight as
where the path integral over includes the initial configuration , whereas the notation denotes the same history of active fluctuations without the initial configuration , and similarly for . Moreover,
is the standard Onsager-Machlup path weight [ 45 – 47 ] for the joint process , where we use the shorthand notation and ,, etc. The technical challenge consists in performing the integral over the active fluctuations without explicitly specifying the initial distribution .
3. Path Weight for Independent Initial Conditions
3. 1. The Results From Ref. 18
We start by summarizing the main results from Ref. 18 . In Ref. 18 we gave the path weight for trajectories , running from initial time to final time , assuming that the active noise is initially independent of the particle positions and in its steady state, i. e.,. We found
with the memory kernel
where and .
3. 2. Stationary-State Scenario
If we have a trajectory running from arbitrary times to instead, we can shift time as and identify as the duration of the trajectory to convert path weights to those running from to . Performing these replacements, the memory kernel Eq. 7 turns into
Consequently, the corresponding path weight for a trajectory starting at at time reads
Letting (stationary-state scenario), the memory kernel becomes
For “ infinitely long” stationary-state trajectories, for which also , this expression further reduces to
The latter special case has been derived independently in Ref. 24 via Fourier transformation, see eq. 25 in Ref. 24 , in order to analyze “ entropy production” based on path-probability ratios. Similar Fourier-transform techniques for Langevin systems have been used in Ref. 48 for deriving a fluctuation relation at large times, with findings for the non-local “ inverse temperature” as integration kernel in the “ entropy production” corresponding to those in Ref. 24 , and to our Eq. 11 .
4. Path Weight for Arbitrary Initial Conditions
In this section, we generalize the path weight Eq. 9 to allow for arbitrary joint initial distributions of particle positions and active fluctuations. Keeping in mind that we can time-shift final results between trajectories running during a time interval and during arbitrary intervals as in Section 3. 2, we here consider without loss of generality trajectories with and . For notational simplicity we drop the subscripts or on and .
We start in Section 4. 1 by first calculating for a general Gaussian initial distribution of independent of , which has variance and is centered at ,
Then, in Section 4. 2, we show how this result can be used to cover any arbitrary initial distribution .
4. 1 Gaussian Initial Distribution
With Eqs 4 and 5 , and the initial distribution from Eq. 12 , the path weight we want to evaluate reads
The superscript “” emphasizes again that we use statistically independent initial conditions for and . After partial integration of the terms, similarly as in Ref. 18 , we can express the path integral as
with the differential operator
Performing the Gaussian integral over in Eq. 14 , we obtain
where denotes the operator inverse of in the sense that . It can be constructed similarly to the procedure in Ref. 18 . In particular, we can also write . Here is the Green’s function defined by and . The second ingredient,, is a solution of the associated homogeneous problem,, fixing the boundary terms as prescribed by Eq. 15 . More details are given the Appendix. We find
We note that Eq. 12 includes the steady-state distribution,, which arises for the active noise when evolving independently of the Brownian particle, as a special case for and . Accordingly, we recover Eqs 6 and 7 when plugging and into Eqs 16 and 17 , using .
4. 2. Arbitrary Initial Distribution
To cover arbitrary initial distributions in , we introduce a δ -distribution of the form and rewrite Eq. 4 (with ,) as
In view of Eq. 5 we see that the term in brackets is exactly as defined in Eq. 13 . Since we can also write we conclude that
is the path weight conditioned on an initial position and initial state of the active noise with arbitrary distributions.
With the explicit result Eq. 16 for we thus see that we have to calculate the limit of the expressions ,, and . From Eq. 15 we observe that has a constant term (independent of σ) and contributions quadratic in σ such that reduces to an (irrelevant) constant as . Next, setting in Eq. 17 and using we get
If , too, we obtain
such that
Furthermore, we define
as the memory kernel for the path weight conditioned on an arbitrary initial configuration of particle positions and active fluctuations. Altogether, Eq. 19 for this path weight then becomes
where we have used in the fourth line.
Finally, we can shift trajectories similarly as in Section 3. 2 to obtain the path weight for arbitrary trajectories conditioned on the joint initial state of position and active noise,
with
Given an initial distribution of the active fluctuations conditioned on the initial particle position, we can then compute the position-only path weight of an arbitrary trajectory by averaging over ,
Equations 25 – 27 represent the first central result of the present contribution, a general expression for the path weight of active Ornstein-Uhlenbeck particles in position space only, for arbitrary trajectories with arbitrary initial and final times and arbitrary initial distributions. There is no approximation involved, so that our results are valid for any values of thermal and active noise parameters D and ,.
We expect that the specific initial configuration becomes irrelevant for steady-state trajectories, i. e., in the limit . As , the second line vanishes in Eq. 25 , because . The third line enters into the integral over the initial configuration (see Eq. 27 ) and thus decouples from the trajectory resulting in an irrelevant prefactor. The only relevant contribution as is therefore the first line in Eq. 25 with the integral kernel reducing to
the same expression as from Eq. 10 . This illustrates that the system loses its memory about the initial state as .
Another comparison to our previous results from Section 3. 1 [ 18 ] is obtained by plugging the stationary state distribution into Eq. 27 and performing the Gaussian integral over . In that case, we should get back the result Eq. 8 , Eq. 9 for independent initial conditions. Indeed, including only the terms from Eq. 25 which involve , we evaluate the Gaussian integral over , yielding
with
A somewhat tedious but straightforward calculation then confirms , as expected.
5. Irreversibility
In stochastic thermodynamics [ 2 – 6 ], irreversibility is quantified by comparing the probability of observing a specific trajectory in a given experimental setup with the probability of observing the exact same trajectory traced out backwards when providing identical experimental conditions. In other words, is the probability of observing the “ time-reversed” trajectory
with and , under the time-reversed experimental protocol (note that we disregard for convenience the possibility that parts of the forces could be odd under time reversal; it is straightforward to adapt the expressions below accordingly if necessary). For passive Brownian motion, it has been shown that the log-ratio of these path probabilities is related to the dissipation occurring along the trajectory , quantified as the total change of entropy in the thermal bath and the system. This fundamental connection makes the “ irreversibility measure”
a central quantity of interest also for active particles. Indeed, its connection with dissipation and entropy is under lively debate [ 16 , 18 – 24 ].
We here provide a general expression for based on our result Eqs. 25 – 27 for the path weight . Since the time-reversed trajectory is supposed to occur under identical conditions as the forward trajectory , we can express its probability density via Eqs. 25 – 27 as well, if we replace by the time-reversed protocol (see below Eq. 31 ). Using Eq. 31 we then rewrite the path weight for the reversed path in terms of the forward path (and the original protocol ). The resulting expression for is formally similar to Eq. 25 , just with the sign inverted for all terms and all initial coordinates replaced by final ones. Plugging the path weights and into Eq. 32 , and denoting the conditional average over the initial configuration of the active fluctuations in Eq. 27 by and the corresponding one over final configurations by , we find
This expression constitutes the second central result of this work. Given any spatial trajectory , the measure quantifies how irreversible this single trajectory is in the sense of the definition Eq. 32 . A trajectory with is reversible, i. e., movement of the AOUP forward or backward along the trajectory occurs with equal probability, but the larger the (exponentially) less likely it is to observe the backward movement.
Central properties of the active fluctuations which drive the particle motion are represented by the parameters (the strength of the active fluctuations) and (their correlation time, hidden in ). Moreover, our general result Eq. 33 contains averages over the distributions of the active fluctuations and at the beginning of the particle trajectory and at the beginning of the reversed trajectory (see also Eq. 27 ). We therefore presuppose that we have some knowledge or control over these distributions when setting up the experiment, even though the (microscopic) degrees of freedom related to the active fluctuations typically are inaccessible, and so are specific realizations of or the specific values of and . For artificial active colloids [ 10 ], or in computer experiments, we may imagine, e. g., to let the particles orient randomly before “ switching on” the activity, possibly with a specific strength (distribution).
In the spirit of quantifying irreversibility by asking how likely it is to observe a reversed trajectory compared to its forward twin when starting from identically prepared experimental setups (except for the initial particle position, which is for the forward path and for the backward path), we may take the distributions for and to be the same, or to be “ mirror images” of each other under sign-inversion, depending on the physical situation modeled by the active fluctuations (see the discussion in Ref. 18 ) 1 . Moreover, we may imagine the experiment to be prepared in a way that the initial distributions of the active fluctuations for forward and backward motion are independent of particle positions (a notable exception arising, if the experiment starts from a joint steady state). For such independent initial conditions with identical (or “ mirrored”) distributions, the third line in Eq. 33 vanishes. The second line, however, is still non-zero, and can be interpreted to quantify the contribution to irreversibility from the initial configuration of the active fluctuations.
The first line in Eq. 33 is independent of and , and thus measures the irreversibility associated with the time-evolution of the spatial particle position alone. It contains three terms (two in the double-integral and a boundary term), which all represent different contributions to irreversibility. The boundary term does not involve any parameters characterizing the thermal bath or the active fluctuations, and is usually interpreted as the change in system entropy of the AOUP between the beginning and end of the trajectory [ 18 ]. The integral involving is independent of the active parameters and , and is formally identical to the entropy produced in the thermal bath along the trajectory as known for passive Brownian motion [ 4 ]. However, in the present case of an AOUP it does not capture the full heat dissipation, because in addition to the force also active self-propulsion “ forces” drive the particle and contribute to dissipation, i. e., even though the -integral can be interpreted as the “ thermal contribution” to irreversibility due to the AOUP being in contact with a heat bath, it cannot be identified with the entropy produced in this thermal environment (see also the detailed discussion in Ref. 18 ). The second, proper double-integral encodes the (statistical) characteristics of the active fluctuations via its kernel and, furthermore, vanishes if active propulsion is “ switched off”, i. e., for . Hence, it can be interpreted to measure the irreversibility “ produced” by the active fluctuations along the trajectory , and we will refer to it as the “ active contribution” to irreversibility.
These two contributions to irreversibility from the particle trajectory , the thermal one and the active one, are non-zero only if external forces are present in addition to the active self-propulsion (likewise for the integral in the second line, i. e., for the contribution associated with the initial preparation of the system), implying that the trajectories of “ free active motion” appear reversible. For non-conservative forces, both contributions typically lead to a time-extensive increase of irreversibility with the trajectory length τ. For conservative forces derived from a stationary confining potential , the thermal contribution reduces to the boundary term and thus is non-extensive in τ. Due to the double-integral nature of the active part with the non-local kernel a similarly obvious argument does not apply. Indeed, the question whether or not, or in how far, the trajectory of an AOUP in a confining potential appears (ir)reversible is still not fully answered [ 16 , 18 , 49 ]. We can, however, draw some conclusions from considering the limiting cases of small and large correlations times and . In the first case,, the active fluctuations become white and thus behave like a thermal bath, such that the AOUP can be imagined to be a passive Brownian particle in contact with a heat bath at effective temperature , trapped in a confining potential. Accordingly, irreversibility production is non-extensive. In the second case,, the active fluctuations become constant and thus behave like a bias force which slightly tilts the confining potential. Again, the situation is similar to a trapped passive Brownian particle with non-extensive irreversibility production. We can therefore expect that the active contribution to irreversibility in a confining potential may become maximal at some intermediate value of .
Another important implication of the result Eq. 33 is that the rate at which irreversibility is produced in the stationary state (i. e., upon letting , cf., Section 3. 2) is independent of the specific initial distribution . Indeed, the terms in the second and third lines of Eq. 33 vanish as , and the memory kernel in the first line assumes the form Eq. 28 , independent of the initial distribution (see the discussion in Section 4. 2). Hence, if we are only interested in long-time properties, the initial configuration in particular of the self-propulsion drive is irrelevant. While we might have intuitively expected that the long-time irreversibility production rate is independent of the details of the initial setup, it is not completely obvious in the presence of memory effects [ 50 , 51 ]. The fact that we can verify it for AOUPs is reassuring though, in so far as control over the initial state is limited in typical active particle systems (as already mentioned above). For infinitely long trajectories in the stationary state , the expression for reduces further to
with from Eq. 11 (see the discussion around Eq. 28 ), in agreement with the findings in Refs. 24 and 48 .
We conclude this discussion with a remark concerning the relation between the expression for found earlier in Ref. 18 and the result Eq. 33 derived here. In Ref. 18 , we have calculated under the assumption that the active fluctuations are in their stationary state, independent of initial particle positions, at the beginning of the forward path and at the beginning of the backward path, i. e., and . The resulting expression for Eq. 33 looks formally identical to the first line in Eq. 33 , but with substituted by from Eq. 8 (compare with eqs. 42b and 40a in Ref. 18 ). As we can see from the calculation at the end of Section 4. 2 above, the “ amount of irreversibility” stemming from the particular stationary-state initial configuration of the active fluctuations has been absorbed into , and is therefore not explicitly visible in Ref. 18 as an additional term analogous to the second line in Eq. 33 .
6. Conclusion
What can we learn about the non-equilibrium nature of an active system by observing particle trajectories, i. e., the evolution of particle positions over time? Within the framework of a minimal model for particulate active matter on the micro- and nanoscale, the active Ornstein-Uhlenbeck particle [ 15 , 25 – 31 ] (see Eqs. 1 and 2 ), we here contribute an essential step toward exploring this question by deriving an exact analytical expression for the path weight ( Eqs. 25 – 27 ), which is valid for any values of the model parameters, any external driving forces, arbitrary initial particle positions and configurations of the active fluctuations, and arbitrary trajectory durations. We use this general expression to calculate the log-ratio of path weights for forward vs. backward trajectories (see Eq. 33 ). In analogy to the stochastic thermodynamics of passive Brownian particles [ 2 – 6 ], such an irreversibility measure may provide an approach toward a thermodynamic description of active matter [ 16 , 18 – 24 ].
In future works we may build on these results to further explore the non-equilibrium properties of AOUPs. A highly interesting problem is a possible thermodynamic interpretation of the path probability ratio [ 18 ], e. g., via exploring its connection to active pressure [ 14 , 52 ], to the different phases observed in active matter [ 53 ], or to the arrow of time [ 54 , 55 ] in these systems. Such a thermodynamic interpretation, in particular concerning the role of dissipation, may finally allow to quantify efficiency fluctuations in stochastic heat engines operating between active baths [ 56 ], in analogy to passive stochastic heat engines [ 57 – 59 ]. Other important questions which can be approached directly by using our general result for the path weight include the analysis of the response behavior under external perturbations [ 43 ] or of violations of the fluctuation-response relation [ 60 , 61 ] due to the inherent non-equilibrium character of active matter, and their potential for probing properties of the active fluctuations [ 61 ]. Finally, it would be interesting to explore if our analytical methods used here to integrate out the simple Ornstein-Uhlenbeck fluctuations Eq. 2 can be extended to treat more general active fluctuations, like the ones considered in Ref. 62 .
Data Availability Statement
The original contributions presented in the study are included in the article/Supplementary Material, further inquiries can be directed to the corresponding authors.
Author Contributions
All authors contributed equally to this work.
Funding
This research has been funded by the Swedish Research Council (Vetenskapsrådet) under the Grants No. 2016-05412 (RE) and by the Deutsche Forschungsgemeinschaft (DFG) within the Research Unit FOR 2692 under Grant No. 397303734 (LD).
Conflict of Interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Acknowledgments
We thank Stefano Bo for stimulating discussion. LD gratefully acknowledges support by the Nordita visiting PhD program.
Appendix
Evaluation of
We here outline the calculation of as the inverse of the differential operator
i. e., is a solution of the equation . In fact, the operator is “ diagonal” in the time arguments such that solves the differential equation
Note that is essentially a fixed parameter here, just like D ,, and σ. To find the solution, we follow the procedure from Ref. 18 , i. e., we compose from two parts as . First, we construct the function as the Green’s function solving the equation with homogeneous boundary conditions . Second, we determine as a solution of the homogeneous problem such that the boundary terms are fixed as prescribed by Eq. 36 .
We can construct both parts, and , from the general solution
of the homogeneous ordinary differential equation
associated with Eq. 36 . The Green’s function is exactly the same as in Ref. 18 . Accordingly, its construction is completely analogous to the procedure outlined in Appendix B of Ref. 18 , and we only recall the result here,
The difference between the present calculation and the one in Ref. 18 is the boundary term at , which contains a contribution from the arbitrary (Gaussian) initial distribution of the active fluctuations. To take both boundary terms in Eq. 36 into account, we make an ansatz of the form Eq. 37 for the function , i. e.,. The coefficients are fixed by ensuring that the full solution fulfills Eq. 36 . Plugging into Eq. 36 , and using and , we are left with
where . Requiring that the terms in the two square brackets each vanish, we can solve for the coefficients , yielding
Substituting these coefficients into the above ansatz for [see below Eq. 39 ] and combining it with from Eq. 39 according to , we obtain the result stated in Eq. 17 of the main text.
Evaluation of
We here outline the calculation of as the inverse of the differential operator
i. e., is a solution of the equation . In fact, the operator is “ diagonal” in the time arguments such that solves the differential equation
Note that is essentially a fixed parameter here, just like D ,, and σ. To find the solution, we follow the procedure from Ref. 18 , i. e., we compose from two parts as . First, we construct the function as the Green’s function solving the equation with homogeneous boundary conditions . Second, we determine as a solution of the homogeneous problem such that the boundary terms are fixed as prescribed by Eq. 36 .
We can construct both parts, and , from the general solution
of the homogeneous ordinary differential equation
associated with Eq. 36 . The Green’s function is exactly the same as in Ref. 18 . Accordingly, its construction is completely analogous to the procedure outlined in Appendix B of Ref. 18 , and we only recall the result here,
The difference between the present calculation and the one in Ref. 18 is the boundary term at , which contains a contribution from the arbitrary (Gaussian) initial distribution of the active fluctuations. To take both boundary terms in Eq. 36 into account, we make an ansatz of the form Eq. 37 for the function , i. e.,. The coefficients are fixed by ensuring that the full solution fulfills Eq. 36 . Plugging into Eq. 36 , and using and , we are left with
where . Requiring that the terms in the two square brackets each vanish, we can solve for the coefficients , yielding
Substituting these coefficients into the above ansatz for [see below Eq. 39 ] and combining it with from Eq. 39 according to , we obtain the result stated in Eq. 17 of the main text.
Footnotes
1 In fact, to us these seem to be the only proper choices, if we want to quantify irreversibility . For arbitrary, unrelated distributions of and , we would compare forward and backward paths generated under different experimental conditions.
References
1. Callen HB. Thermodynamics & an introduction to thermostatistics . Hoboken, NJ: John Wiley & Sons (2006). 512 p.
Google Scholar
2. Seifert U. Stochastic thermodynamics: principles and perspectives. Eur Phys J B.(2008). 64: 423–31. doi: 10. 1140/epjb/e2008-00001-9
CrossRef Full Text | Google Scholar
3. Jarzynski C. Equalities and inequalities: irreversibility and the second law of thermodynamics at the nanoscale. Annu Rev Condens Matter Phys.(2011). 2: 329–51. doi: 10. 1146/annurev-conmatphys-062910-140506
CrossRef Full Text | Google Scholar
4. Seifert U. Stochastic thermodynamics, fluctuation theorems and molecular machines. Rep Prog Phys.(2012). 75: 126001. doi: 10. 1088/0034-4885/75/12/126001
CrossRef Full Text | Google Scholar
5. Van den Broeck C, Esposito M. Ensemble and trajectory thermodynamics: a brief introduction. Phys Stat Mech Appl.(2015). 418: 6–16. doi: 10. 1016/j. physa. 2014. 04. 035
CrossRef Full Text | Google Scholar
6. Seifert U. Stochastic thermodynamics: from principles to the cost of precision. Phys Stat Mech Appl.(2018). 504: 176–91. doi: 10. 1016/j. physa. 2017. 10. 024
CrossRef Full Text | Google Scholar
7. Romanczuk P, Bär M, Ebeling W, Lindner B, Schimansky-Geier L. Active brownian particles. Eur Phys J Spec Top.(2012). 202: 1–162. doi: 10. 1140/epjst/e2012-01529-y
CrossRef Full Text | Google Scholar
8. Cates ME. Diffusive transport without detailed balance in motile bacteria: does microbiology need statistical physics? Rep Prog Phys.(2012). 75: 042601. doi: 10. 1088/0034-4885/75/4/042601
CrossRef Full Text | Google Scholar
9. Elgeti J, Winkler RG, Gompper G. Physics of microswimmers-single particle motion and collective behavior: a review. Rep Prog Phys.(2015). 78: 056601. doi: 10. 1088/0034-4885/78/5/056601
CrossRef Full Text | Google Scholar
10. Bechinger C, Di Leonardo R, Löwen H, Reichhardt C, Volpe G, Volpe G. Active particles in complex and crowded environments. Rev Mod Phys.(2016). 88: 045006. doi: 10. 1103/RevModPhys. 88. 045006
CrossRef Full Text | Google Scholar
11. Patteson AE, Gopinath A, Arratia PE. Active colloids in complex fluids. Curr Opin Colloid Interface Sci.(2016). 21: 86–96. doi: 10. 1016/j. cocis. 2016. 01. 001
CrossRef Full Text | Google Scholar
12. Tailleur J, Cates ME. Statistical mechanics of interacting run-and-tumble bacteria. Phys Rev Lett.(2008). 100: 218103. doi: 10. 1103/PhysRevLett. 100. 218103
CrossRef Full Text | Google Scholar
13. Speck T, Bialké J, Menzel AM, Löwen H. Effective cahn-hilliard equation for the phase separation of active brownian particles. Phys Rev Lett.(2014). 112: 218304. doi: 10. 1103/physrevlett. 112. 218304
CrossRef Full Text | Google Scholar
14. Takatori SC, Yan W, Brady JF. Swim pressure: stress generation in active matter. Phys Rev Lett.(2014). 113: 028103. doi: 10. 1103/physrevlett. 113. 028103
CrossRef Full Text | Google Scholar
15. Farage TFF, Krinninger P, Brader JM. Effective interactions in active brownian suspensions. Phys Rev E.(2015). 91: 042310. doi: 10. 1103/PhysRevE. 91. 042310
CrossRef Full Text | Google Scholar
16. Fodor É, Nardini C, Cates ME, Tailleur J, Visco P, van Wijland F. How far from equilibrium is active matter? Phys Rev Lett.(2016). 117: 038103. doi: 10. 1103/PhysRevLett. 117. 038103
CrossRef Full Text | Google Scholar
17. Nardini C, Fodor É, Tjhung E, van Wijland F, Tailleur J, Cates ME. Entropy production in field theories without time-reversal symmetry: quantifying the non-equilibrium character of active matter. Phys Rev X.(2017). 7: 021007. doi: 10. 1103/physrevx. 7. 021007
CrossRef Full Text | Google Scholar
18. Dabelow L, Bo S, Eichhorn R. Irreversibility in active matter systems: fluctuation theorem and mutual information. Phys Rev X.(2019). 9: 021009. doi: 10. 1103/physrevx. 9. 021009
CrossRef Full Text | Google Scholar
19. Marconi UMB, Puglisi A, Maggi C. Heat, temperature and clausius inequality in a model for active brownian particles. Sci Rep.(2017). 7: 46496. doi: 10. 1038/srep46496
CrossRef Full Text | Google Scholar
20. Mandal D, Klymko K, DeWeese MR. Entropy production and fluctuation theorems for active matter. Phys Rev Lett.(2017). 119: 258001. doi: 10. 1103/physrevlett. 119. 258001
CrossRef Full Text | Google Scholar
21. Puglisi A, Marconi UMB. Clausius relation for active particles: what can we learn from fluctuations. Entropy.(2017). 19: 356. doi: 10. 3390/e19070356
CrossRef Full Text | Google Scholar
22. Caprini L, Marconi UMB, Puglisi A, Vulpiani A. Comment on “ entropy production and fluctuation theorems for active matter”. Phys Rev Lett.(2018). 121: 139801. doi: 10. 1103/physrevlett. 121. 139801
CrossRef Full Text | Google Scholar
23. Mandal D, Klymko K, DeWeese MR. A reply to the comment by Mandal, Klymko, and DeWeese. Phys Rev Lett.(2018). 121: 139802. doi: 10. 1103/physrevlett. 121. 139802
CrossRef Full Text | Google Scholar
24. Caprini L, Marconi UMB, Puglisi A, Vulpiani A. The entropy production of Ornstein-Uhlenbeck active particles: a path integral method for correlations. J Stat Mech.(2019). 2019: 053203. doi: 10. 1088/1742-5468/ab14dd
CrossRef Full Text | Google Scholar
25. Fily Y, Marchetti MC. Athermal phase separation of self-propelled particles with no alignment. Phys Rev Lett.(2012). 108: 235702. doi: 10. 1103/PhysRevLett. 108. 235702
CrossRef Full Text | Google Scholar
26. Maggi C, Paoluzzi M, Pellicciotta N, Lepore A, Angelani L, Di Leonardo R. Generalized energy equipartition in harmonic oscillators driven by active baths. Phys Rev Lett.(2014). 113: 238303. doi: 10. 1103/PhysRevLett. 113. 238303
CrossRef Full Text | Google Scholar
27. Argun A, Moradi A-R, Pinçe E, Bagci GB, Imparato A, Volpe G. Non-Boltzmann stationary distributions and nonequilibrium relations in active baths. Phys Rev E.(2016). 94: 062150. doi: 10. 1103/PhysRevE. 94. 062150
CrossRef Full Text | Google Scholar
28. Maggi C, Paoluzzi M, Angelani L, Di Leonardo R. Memory-less response and violation of the fluctuation-dissipation theorem in colloids suspended in an active bath. Sci Rep.(2017). 7: 17588. doi: 10. 1038/s41598-017-17900-2
CrossRef Full Text | Google Scholar
29. Chaki S, Chakrabarti R. Entropy production and work fluctuation relations for a single particle in active bath. Phys Stat Mech Appl.(2018). 511: 302–15. doi: 10. 1016/j. physa. 2018. 07. 055
CrossRef Full Text | Google Scholar
30. Marconi UMB, Maggi C. Towards a statistical mechanical theory of active fluids. Soft Matter.(2015). 11: 8768–81. doi: 10. 1039/C5SM01718A
CrossRef Full Text | Google Scholar
31. Shankar S, Marchetti MC. Hidden entropy production and work fluctuations in an ideal active gas. Phys Rev E.(2018). 98: 020604. doi: 10. 1103/physreve. 98. 020604
CrossRef Full Text | Google Scholar
32. Koumakis N, Maggi C, Di Leonardo R. Directed transport of active particles over asymmetric energy barriers. Soft Matter.(2014). 10: 5695–701. doi: 10. 1039/c4sm00665h
CrossRef Full Text | Google Scholar
33. Szamel G. Self-propelled particle in an external potential: existence of an effective temperature. Phys Rev E.(2014). 90: 012111. doi: 10. 1103/physreve. 90. 012111
CrossRef Full Text | Google Scholar
34. Szamel G, Flenner E, Berthier L. Glassy dynamics of athermal self-propelled particles: computer simulations and a nonequilibrium microscopic theory. Phys Rev E.(2015). 91: 062304. doi: 10. 1103/physreve. 91. 062304
CrossRef Full Text | Google Scholar
35. Maggi C, Marconi UMB, Gnan N, Di Leonardo R. Multidimensional stationary probability distribution for interacting active particles. Sci Rep.(2015). 5: 10742. doi: 10. 1038/srep10742
CrossRef Full Text | Google Scholar
36. Flenner E, Szamel G, Berthier L. The nonequilibrium glassy dynamics of self-propelled particles. Soft Matter.(2016). 12: 7136–49. doi: 10. 1039/C6SM01322H
CrossRef Full Text | Google Scholar
37. Paoluzzi M, Maggi C, Marconi UMB, Gnan N. Critical phenomena in active matter. Phys Rev E.(2016). 94: 052602. doi: 10. 1103/physreve. 94. 052602
CrossRef Full Text | Google Scholar
38. Marconi UMB, Gnan N, Paoluzzi M, Maggi C, Di Leonardo R. Velocity distribution in active particles systems. Sci Rep.(2016). 6: 23297. doi: 10. 1038/srep26215
CrossRef Full Text | Google Scholar
39. Szamel G. Evaluating linear response in active systems with no perturbing field. Europhys Lett.(2017). 117: 50010. doi: 10. 1209/0295-5075/117/50010
CrossRef Full Text | Google Scholar
40. Sandford C, Grosberg AY, Joanny JF. Pressure and flow of exponentially self-correlated active particles. Phys Rev E.(2017). 96: 052605. doi: 10. 1103/physreve. 96. 052605
CrossRef Full Text | Google Scholar
41. Caprini L, Marconi UMB, Vulpiani A. Linear response and correlation of a self-propelled particle in the presence of external fields. J Stat Mech.(2018). 2018: 033203. doi: 10. 1088/1742-5468/aaa78c
CrossRef Full Text | Google Scholar
42. Fodor É, Cristina Marchetti M. The statistical physics of active matter: from self-catalytic colloids to living cells. Phys Stat Mech Appl.(2018). 504: 106–20. doi: 10. 1016/j. physa. 2017. 12. 137
CrossRef Full Text | Google Scholar
43. Dal Cengio S, Levis D, Pagonabarraga I. Linear response theory and green-kubo relations for active matter. Phys Rev Lett.(2019). 123: 238003. doi: 10. 1103/physrevlett. 123. 238003
CrossRef Full Text | Google Scholar
44. Bonilla L. Active ornstein-uhlenbeck particles. Phys Rev.(2019). 100: 022601. doi: 10. 1103/physreve. 100. 022601
CrossRef Full Text | Google Scholar
45. Onsager L, Machlup S. Fluctuations and irreversible processes. Phys Rev.(1953). 91: 1505–12. doi: 10. 1103/PhysRev. 91. 1505
CrossRef Full Text | Google Scholar
46. Machlup S, Onsager L. Fluctuations and irreversible process. II. Systems with kinetic energy. Phys Rev.(1953). 91: 1512–5. doi: 10. 1103/PhysRev. 91. 1512
CrossRef Full Text | Google Scholar
47. Cugliandolo LF, Lecomte V. Rules of calculus in the path integral representation of white noise Langevin equations: the Onsager-Machlup approach. J Phys Math Theor.(2017). 50: 345001. doi: 10. 1088/1751-8121/aa7dd6
CrossRef Full Text | Google Scholar
48. Zamponi F, Bonetto F, Cugliandolo LF, Kurchan J. A fluctuation theorem for non-equilibrium relaxational systems driven by external forces. J. Stat. Mech.(2005). 2005: P09013. doi: 10. 1088/1742-5468/2005/09/p09013
CrossRef Full Text | Google Scholar
49. Dabelow L, Bo S, Eichhorn R. How irreversible are steady-state trajectories of a trapped active particle?(unpublished).
Google Scholar
50. Harris RJ, Touchette H. Current fluctuations in stochastic systems with long-range memory. J Phys Math Theor.(2009). 42: 342001. doi: 10. 1088/1751-8113/42/34/342001
CrossRef Full Text | Google Scholar
51 . Puglisi A, Villamaina D. Irreversible effects of memory. Europhys Lett.(2009). 88: 30004. doi: 10. 1209/0295-5075/88/30004
CrossRef Full Text | Google Scholar
52. Solon AP, Stenhammar J, Wittkowski R, Kardar M, Kafri Y, Cates ME, et al. Pressure and phase equilibria in interacting active brownian spheres. Phys Rev Lett.(2015). 114: 198301. doi: 10. 1103/physrevlett. 114. 198301
CrossRef Full Text | Google Scholar
53. Cates ME, Tailleur J. Motility-induced phase separation. Annu Rev Condens Matter Phys.(2015). 6: 219–44. doi: 10. 1146/annurev-conmatphys-031214-014710
CrossRef Full Text | Google Scholar
54. Roldán É, Neri I, Dörpinghaus M, Meyr H, Jülicher F. Decision making in the arrow of time. Phys Rev Lett.(2015). 115: 250602. doi: 10. 1103/physrevlett. 115. 250602
CrossRef Full Text | Google Scholar
55. Roldán É, Barral J, Martin P, Parrondo JM, Jülicher F. Arrow of time in active fluctuations. Preprint repository name [Preprint] (2018). Available from: https://arxiv. org/abs/1803. 04743 .
Google Scholar
56. Krishnamurthy S, Ghosh S, Chatterji D, Ganapathy R, Sood AK. A micrometre-sized heat engine operating between bacterial reservoirs. Nat Phys.(2016). 12: 1134–8. doi: 10. 1038/nphys3870
CrossRef Full Text | Google Scholar
57. Verley G, Esposito M, Willaert T, Van den Broeck C. The unlikely Carnot efficiency. Nat Commun.(2014). 5: 4721. doi: 10. 1038/ncomms5721
CrossRef Full Text | Google Scholar
58. Verley G, Willaert T, Van den Broeck C, Esposito M. Universal theory of efficiency fluctuations. Phys Rev E.(2014). 90: 052145. doi: 10. 1103/physreve. 90. 052145
CrossRef Full Text | Google Scholar
59. Manikandan SK, Dabelow L, Eichhorn R, Krishnamurthy S. Efficiency fluctuations in microscopic machines. Phys Rev Lett.(2019). 122: 140601. doi: 10. 1103/physrevlett. 122. 140601
CrossRef Full Text | Google Scholar
60. Harada T, Si S. Equality connecting energy dissipation with a violation of the fluctuation-response relation. Phys Rev Lett.(2005). 95: 130602. doi: 10. 1103/physrevlett. 95. 130602
CrossRef Full Text | Google Scholar
61. Gnesotto FS, Mura F, Gladrow J, Broedersz CP. Broken detailed balance and non-equilibrium dynamics in living systems: a review. Rep Prog Phys.(2018). 81: 066601. doi: 10. 1088/1361-6633/aab3ed
CrossRef Full Text | Google Scholar
62. Sevilla FJ, Rodríguez RF, Gomez-Solano JR. Generalized Ornstein-Uhlenbeck model for active motion. Phys Rev E.(2019). 100: 032123. doi: 10. 1103/physreve. 100. 032123
CrossRef Full Text | Google Scholar